Table 2

Assembly statistics for the O. niloticus and M. zebra opsin-containing BACs

Species

Opsin array

Clone ID

Estimated clone size (bp)

Sequencing method

Contig size (bp)

Reads assembled (%)

GenBank accession nos.


O. niloticus

SWS1

T4057DH09

210,000

ABI, 454

171,838

77 K + 3 K

(95 + 49)

JF262087

SWS2-LWS

T4075AE05

184,000

ABI

171,742

3072

(85.1)

JF262088

RH2A-RH2B

T4024BG04

200,000

ABI

177,366

3072

(84.2)

JF262086

M. zebra

SWS1

Mz042C6

87,000

454

77,652

79,892

(95.2)

JF262085

SWS2-LWS

Mz045P9

96,000

454

107,624

43,135

(93.8)

JF262084

RH2A-RH2B

Mz088M22

133,000

454

83,463

21,758

(94.8)

JF262089


1 Estimated clone size based on Pulsed Gel Electrophoresis.

O'Quin et al. BMC Evolutionary Biology 2011 11:120   doi:10.1186/1471-2148-11-120

Open Data