Predicted structures of orthologues of domain B of exon6 in mammals. (A) The structure predicted by PMmulti and used by Infernal. The circled part was identified by comparing the structure with the structures predicted by Mfold based on the position and base pairing of sequence. (B) One structure predicted by Mfold in chimpanzee; the circled part is nearly the same as that predicted for the human sequence. (C) One structure predicted by Mfold in mouse; the circled part is slightly different but still occurs at one end. (D) One structure predicted by Mfold in dog; the circled part is embedded within other sequences.
He et al. BMC Evolutionary Biology 2011 11:102 doi:10.1186/1471-2148-11-102