The maximum likelihood tree from PhyML, with 246 taxa based on a 266 aa alignment (PhyML/AA). The individual LHCs are colored by taxonomic lineage: chlorophytes and chlorarachniophytes (green), cryptophytes (turquoise), fucoxanthin-containing dinoflagellates (light purple), peridinin-containing dinoflagellates (light blue), haptophytes (dark purple), heterokonts (brown), rhodophytes (red). The taxon name and sequence identifier are given for each sequence, and gene name is given when available. See Additional File 1, Additional Figure S1 for complete support values from other analyses.
Hoffman et al. BMC Evolutionary Biology 2011 11:101 doi:10.1186/1471-2148-11-101