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Open Access Highly Accessed Research article

Phylogenomic reconstruction of lactic acid bacteria: an update

Zhi-Gang Zhang1, Zhi-Qiang Ye13, Li Yu2* and Peng Shi1*

Author Affiliations

1 State Key Laboratory of Genetic Resources and Evolution, Laboratory of Evolutionary and Functional Genomics, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, PR China

2 Laboratory for Conservation and Utilization of Bio-resource & Key Laboratory for Microbial Resources, Ministry of Education, Yunnan University, PR China

3 Graduate School of the Chinese Academy of Sciences, Beijing, PR China

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BMC Evolutionary Biology 2011, 11:1  doi:10.1186/1471-2148-11-1

Published: 1 January 2011

Additional files

Additional file 1:

Table S1. Summary of 310 one-to-one orthologs from 28 LAB species and one outgroup (Bacillus subtilis).

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Additional file 2:

Table S2. Summary of 232 one-to-one orthologs used in LAB phylogenomic inference and their functional categories based on COG annotation.

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Additional file 3:

Table S3. Robinson-Foulds distances between different tree topologies.

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Additional file 4:

Figure S1. Single gene trees inferred from ML analyses with 1,000 replicates.

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Open Data