Table 4

Summary of all the functional categories of the proteins shared by Acinetobacter plasmids and chromosomes.

Functional category

A. baumannii ATCC17978

A. baumannii AYE

A. baumannii SDF

A. baumannii AB0057

A. baumannii AB307

A. baumannii ACICU

Acinetobacter. sp. ADP1

Total


Transposases

4

0

279

3

0

2

0

288

No Pfam hits

5

8

7

13

8

14

4

61

Uncharcterized/others

7

5

0

3

0

7

4

26

Cold-shock DNA-binding domain

2

4

1

3

4

2

3

19

Integrase

1

3

0

3

0

9

0

16

Zinc-binding dehydrogenase

1

2

1

2

2

2

2

12

Nucleoside recognition

3

1

1

1

1

1

1

9

ABC transporter

0

1

1

2

1

1

1

7

H-NS histone family

1

1

1

1

1

1

1

7

Penicillin binding protein transpeptidase domain

1

1

1

2

1

1

0

7

Mer-related protein

0

4

0

2

0

0

0

6

Haloacid dehalogenase-like hydrolase

1

1

1

1

1

1

0

6

Cation efflux family

1

1

1

1

1

1

0

6

regulatory proteins tetR-like

0

1

1

1

1

1

1

6

Catalase

1

1

0

1

1

1

0

5

Secretory lipase

1

1

0

1

1

1

0

5

AraC-like ligand binding domain

1

1

0

1

1

1

0

5

Resolvase

1

0

1

0

0

0

0

2

Proteins shared with plasmids at 50% identity

31

36

296

41

24

46

17

493


Fondi et al. BMC Evolutionary Biology 2010 10:59   doi:10.1186/1471-2148-10-59

Open Data