Additional file 4.

Phylogenetic profiling and identification codes at 100% and 50% identity thresholds. Neighbor joining dendrograms built using the Jaccard distance matrix values (see text for details) obtained with a threshold of 100% for plasmids (a) and protein clusters (b). Neighbor joining dendrograms of protein clusters with representative GI codes. at 50% (c) and 100% (d) identity thresholds.

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Fondi et al. BMC Evolutionary Biology 2010 10:59   doi:10.1186/1471-2148-10-59