Open Access Highly Accessed Research article

Ribonucleotide reduction - horizontal transfer of a required function spans all three domains

Daniel Lundin1, Simonetta Gribaldo2, Eduard Torrents13, Britt-Marie Sjöberg1* and Anthony M Poole14*

Author Affiliations

1 Department of Molecular Biology and Functional Genomics, Stockholm University, SE-106 91 Stockholm, Sweden

2 Unite Biologie Moléculaire du Gène chez les Extremophiles (BMGE), Departement de Microbiologie, Institut Pasteur, Paris, France

3 Institute for Bioengineering of Catalonia (IBEC), Scientific Park of Barcelona, Barcelona, Spain

4 School of Biological Sciences, University of Canterbury, Christchurch 8140, New Zealand

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BMC Evolutionary Biology 2010, 10:383  doi:10.1186/1471-2148-10-383

Published: 10 December 2010

Additional files

Additional file 1:

All PhyML trees in Dendroscope format. This file is a gzipped tar archive containing all maximum likelihood trees presented here plus three additional trees from the class I radical-generating subunit (NrdB/F), in Dendroscope format. Individual files can be opened and read using dendroscope [76], which is available for download from: http://www.dendroscope.org/ webcite. Files have long informative names in which individual parts are separated by periods. First comes the name of the protein, second the name of the sequence selection, third the name of the alignment program (probcons in all cases), fourth the name of the site selection (wa00 in all cases) and fifth the PhyML parameters. See additional file 2 for descriptions of trees.

Format: GZ Size: 338KB Download file

Open Data

Additional file 2:

Analysis details and translation tables. This is an OpenOffice spreadsheet containing details regarding all analyses. The first sheet contains number of sequences and positions, plus PhyML parameters for each tree. Sheets T01-T13 contain full names and NCBI accession numbers for names used in our trees.

Format: ODS Size: 165KB Download file

Open Data