Additional file 2.

Angiosperm phylogenetic results using nucleotide data. The identical angiosperm topology was recovered using nucleotide data regardless of taxon set or analytical method. Nodes with bootstrap proportions (BP) = 100 or posterior probabilities (PP) = 1.0 are not shown (most nodes). Support was generally strong within the angiosperms with a few exceptions (shown). Nymphaea alba was always sister to remaining angiosperms, not Amborella trichopoda. Support for this was variable (BS = 78-90% depending on taxon set) and this has been addressed better elsewhere (Leebens-Mack et al.[80]). Mapped non-homoplastic indels are shown in yellow circles) and homoplastic indels are not shown.

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Karol et al. BMC Evolutionary Biology 2010 10:321   doi:10.1186/1471-2148-10-321