Table 1

Similarity of different regions among cDNAs from different gene groups

Gene group

No. of Seq.

5'-Untranslated region (5'-UTR)

Signal peptide coding region (SPCR)

Mature protein coding region (MPCR)

3'-untranslated region (3'-UTR)


Length

Score AVE

Score

range

Length

Score AVE

Score

range

Length

Score AVE

Score

range

Length

Score AVE

Score

range


SSSGP-1

6

58 - 59

92

87 - 98

57

94

92 - 98

252 - 484

49

13 - 100

186 - 258

88

79 - 94


SSSGP-2

15

6 - 198

84

52 - 100

60

87

78 - 95

258 - 462

10

3 - 57

77 - 269

81

57 - 92


SSSGP-3

4

31 - 36

87

80 - 100

54

80

70 - 96

189 - 312

22

6 - 71

64 - 210

73

49 - 98


SSSGP-4

7

37 - 47

94

83 - 100

75

80

58 - 93

360 - 636

10

4 - 27

121 - 222

52

14 - 82


SSSGP-5

3

81 - 87

94

93 - 95

69

96

95 - 97

4 - 279

15

11 - 19

71 - 124

65

48 - 85


SSSGP-6

2

24 - 25

87

87

63

95

95

249 - 255

79

79

57 - 60

91

91


SSSGP-31

4

52 - 65

93

88 - 97

39

97

94 - 100

213 - 330

16

8 - 28

90 - 122

92

85 - 96


Score average (AVE) and score range were derived by pair-wise comparison (Materials and Methods). Except for the two members from group SSSGP-6, the score average for MPCR is at least 40% less than those for other regions. The two members from group SSSGP-6 are likely relatively recent duplicates since they share an overall 83% sequence identity. The score average for these two members is 13% less than those for other regions.

Chen et al. BMC Evolutionary Biology 2010 10:296   doi:10.1186/1471-2148-10-296

Open Data