Table 1

0th order Markov chain model based cluster groups of Brucella genomes

Name

Accession

Database

Group

%GC

Size (mbp)

Host


Brucella abortus 2308 (biovar 1)

AM040264.1

Genbank/NCBI

1

57

3.28

Cattle

Brucella abortus 2308 A§

VBI00022-VBI00023

PATRIC

1

57

3.31

Cattle

Brucella abortus 9-941 (biovar 1)

AE017223.1

Genbank/NCBI

1

57

3.28

Cattle

Brucella abortus S19 (biovar 1)

CP000887.1

Genbank/NCBI

1

57

3.29

Cattle

Brucella canis ATCC 23365

CP000872.1

Genbank/NCBI

1

57

3.32

Dog

Brucella inopinata BO1§

VBI00041-VBI00043

PATRIC

1

57

3.37

Human

Brucella melitensis 16M (biovar 1)

AE008917.1

Genbank/NCBI

1

57

3.32

Sheep, goat

Brucella melitensis 63/9 (biovar 2) §

ACEM01000000

Broad Institute

1

57

3.29

Sheep, goat

Brucella melitensis ATCC 23457 (biovar 2)

CP001488.1

Genbank/NCBI

1

57

3.28

Sheep, goat

Brucella ovis ATCC 25840

CP000709.1

Genbank/NCBI

1

57

3.28

Sheep

Brucella sp. BO2§

VBI00103-VBI00105

PATRIC

1

57

3.28

Human

Brucella suis 1330 (biovar 1)

AE014291.4

Genbank/NCBI

1

57

3.31

Pig

Brucella suis ATCC 23445 (biovar 2)

CP000911.1

Genbank/NCBI

1

57

3.31

Pig, hare

Brucella ceti B1/94§

ACEK01000000

Broad Institute

2

58

3.34

Dolphin, porpoise

Brucella ceti M13/05/1§

ACBP01000000

Broad Institute

2

58

3.34

Dolphin, porpoise

Brucella ceti M490/95/1§

ACEJ01000000

Broad Institute

2

58

3.35

Dolphin, porpoise

Brucella ceti M644/93/1§

ACBO01000000

Broad Institute

2

58

3.33

Dolphin, porpoise

Brucella pinnipedialis B2/94§

ACBN01000000

Broad Institute

2

58

3.34

Seal

Brucella pinnipedialis M292/94/1§

ACEF01000000

Broad Institute

2

58

3.37

Seal

Brucella sp. F5/99§

ACFF01000000

Broad Institute

2

58

3.4

Dolphin

Brucella abortus 86/8/59 (biovar 2) §

ACBJ01000000

Broad Institute

3

58

3.32

Cattle

Brucella melitensis Ether (biovar 3) §

ACEI01000000

Broad Institute

3

57

3.28

Sheep, goat

Brucella melitensis Rev.1 (biovar 1)§

ACEG01000000

Broad Institute

3

57

3.31

Sheep, goat

Brucella neotomae 5K33§

ACEH01000000

Broad Institute

3

58

3.33

Rodent

Brucella sp. 83/13§

ACBQ01000000

Broad Institute

3

58

3.29

Rodent

Brucella suis 513 (biovar 5)§

ACBK01000000

Broad Institute

3

58

3.15

Pig

Brucella suis 686 (biovar 3)§

ACBL01000000

Broad Institute

3

58

3.3

Pig

Brucella pinnipedialis M163/99/10§

ACBM01000000

Broad Institute

4

59

3.41

Seal

Brucella abortus 292 (biovar 4)§

ACBH01000000

Broad Institute

5

58

3.28

Cattle

Brucella abortus 870 (biovar 6)§

ACBG01000000

Broad Institute

5

58

3.27

Cattle

Brucella abortus C68 (biovar 9)§

ACEL01000000

Broad Institute

5

58

3.27

Cattle

Brucella abortus Tulya (biovar 3)§

ACBI01000000

Broad Institute

5

58

3.31

Human

Agrobacterium radiobacter K84

CP000628.1

Genbank/NCBI

6

60

6.66

Plant

Agrobacterium tumefaciens C58

AE007869.2

Genbank/NCBI

6

59

4.92

Plant

Agrobacterium vitis S4

CP000633.1

Genbank/NCBI

6

58

5.01

Plant

Ochrobactrum anthropi ATCC 49188

CP000758.1

Genbank/NCBI

6

56

4.78

Human, plant

Ochrobactrum intermedium LMG 3301§

VBI00028-VBI00031

PATRIC

6

58

4.73

Human


§Genomes not assembled; therefore GC content and genome size are only approximate values

Bohlin et al. BMC Evolutionary Biology 2010 10:249   doi:10.1186/1471-2148-10-249

Open Data