Table 2 |
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|
Model comparison. |
||||||
|
Molecular Clock Model |
CLOC - 3 priors |
CLOC (without data) |
||||
|
mean |
< 95% HPD |
> 95% HPD |
mean |
< 95% HPD |
> 95% HPD |
|
|
|
||||||
|
Likelihood |
-8.42E+004 |
-8.42E+004 |
-8.42E+004 |
- |
- |
- |
|
rate [**] |
1.40E-003 |
1.28E-003 |
1.52E-003 |
50.3 |
4.82 |
99.61 |
|
rootHeight [*] |
61.04 |
56.42 |
66.05 |
60.75 |
40.81 |
86.73 |
|
Molossidae × Vespertilionidae p1 [*] |
39.32 |
37.49 |
41.64 |
41.15 |
37.64 |
46.01 |
|
Mormoopidae × Phyllostomidae p2 [*] |
56.4 |
51.3 |
61.86 |
38.39 |
34.09 |
44.75 |
|
Macrotus × rest of Phyllostomidae p3 [*] |
47.99 |
43.64 |
52.57 |
35.71 |
34 |
39.1 |
|
|
||||||
|
Molecular Clock Model |
UCED - 3 priors |
UCLN - prior p1 |
||||
|
mean |
< 95% HPD |
> 95% HPD |
mean |
< 95% HPD |
> 95% HPD |
|
|
|
||||||
|
Likelihood |
-7.68E+004 |
-7.69E+004 |
-7.68E+004 |
-7.68E+004 |
-7.68E+004 |
-7.68E+004 |
|
rate [**] |
3.96E-003 |
3.04E-003 |
4.81E-003 |
1.90E-003 |
1.15E-003 |
2.73E-003 |
|
rootHeight [*] |
62.9 |
42.24 |
90.14 |
81.84 |
51.92 |
116.2 |
|
Molossidae × Vespertilionidae p1 [*] |
41.5 |
37.71 |
46.88 |
42.43 |
37.71 |
49.8 |
|
Mormoopidae × Phyllostomidae p2 [*] |
39.24 |
34.77 |
46.91 |
77.49 |
54.67 |
104.63 |
|
Macrotus × rest of Phyllostomidae p3 [*] |
35.49 |
34 |
38.5 |
67.49 |
37.86 |
100.44 |
|
|
||||||
|
Molecular Clock Model |
UCLN - prior p2 |
UCLN - prior p3 |
||||
|
mean |
< 95% HPD |
> 95% HPD |
mean |
< 95% HPD |
> 95% HPD |
|
|
|
||||||
|
Likelihood |
-7.68E+004 |
-7.68E+004 |
-7.68E+004 |
-7.68E+004 |
-7.68E+004 |
-7.68E+004 |
|
rate [**] |
4.09E-003 |
3.09E-003 |
4.95E-003 |
3.50E-003 |
2.94E-003 |
4.07E-003 |
|
rootHeight [*] |
38.32 |
30.94 |
49.32 |
42.73 |
34.99 |
51.79 |
|
Molossidae × Vespertilionidae p1 [*] |
22.89 |
12.51 |
34.16 |
22.39 |
12.97 |
33.52 |
|
Mormoopidae × Phyllostomidae p2 [*] |
34.99 |
30.37 |
42.93 |
37.1 |
28.73 |
46.06 |
|
Macrotus × rest of Phyllostomidae p3 [*] |
29.07 |
23.35 |
37.01 |
35.81 |
34 |
39.43 |
|
|
||||||
|
Molecular Clock Model |
UCLN - 2 priors p1+p3 |
UCLN - 3 priors |
||||
|
mean |
< 95% HPD |
> 95% HPD |
mean |
< 95% HPD |
> 95% HPD |
|
|
|
||||||
|
Likelihood |
-7.68E+004 |
-7.68E+004 |
-7.68E+004 |
-7.68E+004 |
-7.68E+004 |
-7.68E+004 |
|
rate [**] |
3.04E-003 |
2.58E-003 |
3.43E-003 |
3.13E-003 |
2.76E-003 |
3.48E-003 |
|
rootHeight [*] |
53.85 |
45.94 |
63.48 |
52.26 |
45.42 |
61.28 |
|
Molossidae × Vespertilionidae p1 [*] |
40.99 |
37.7 |
45.85 |
40.89 |
37.64 |
45.39 |
|
Mormoopidae × Phyllostomidae p2 [*] |
44.56 |
37.34 |
53.21 |
42.16 |
37.13 |
48.61 |
|
Macrotus × rest of Phyllostomidae p3 [*] |
36.96 |
34 |
42.72 |
35.82 |
34 |
39.58 |
|
|
||||||
|
Divergence time estimations of specific nodes under different molecular clock models and different calibration settings are shown. Strict- (CLOC), relaxed exponential- (UCED) and relaxed lognormal- (UCLN) clock models are compared. Likelihood value, mean mutation rate, root age and time to the most recent common ancestor (tMRCAs) of taxon subsets are given. [*] Estimated age of taxon subset in million years ago (Mya). [**] Estimate of the evolutionary rate across the whole tree in units of substitutions per site per million years (Myr). < > Lower and upper bound of the 95% highest posterior density (HPD) interval. 95% HPD is the shortest interval, that contains 95% of the sampled values and is equivalent to a confidence interval. |
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|
Datzmann et al. BMC Evolutionary Biology 2010 10:165 doi:10.1186/1471-2148-10-165 |
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