Table 2

Diversity measures in El Jadida and neighbour populations, within HVRI.

Sample

n

Different sequences

(%)

Haplotype Diversity (SE)

Nucleotide Diversity (SE)

Mean no. pairwise differences (SE)

Tajima's D (p value)

Fu's Fs

(p value)


El Jadida

81

59 (73%)

0.982 (0.008)

0.017 (0.009)

5.945 (2.866)

-1.777 (0.007)

-25.241 (0.000)


Algeria

86

31 (36%)

0.945 (0.010)

0.013 (0.007)

4.822 (2.377)

-1.090 (0.129)

-13.198 (0.002)


Morocco Berber

60

38 (63%)

0.963 (0.015)

0.013 (0.007)

4.594 (2.287)

-1.862 (0.012)

-25.683 (0.000)


Morocco non-Berber

32

29 (91%)

0.988 (0.014)

0.017 (0.009)

6.026 (2.948)

-1.735 (0.022)

-24.805 (0.000)


Souss

50

34 (68%)

0.961 (0.018)

0.013 (0.007)

4.604 (2.298)

-1.551 (0.034)

-25.618 (0.000)


Testour

50

36 (72%)

0.958 (0.021)

0.016 (0.009)

5.783 (2.814)

-1.867 (0.008)

-25.269 (0.000)


Slouguia

28

20 (71)

0.971 (0.018)

0.015 (0.008)

5.254 (2.618)

-1.472 (0.055)

-10.159 (0.000)


El Alia

48

27 (56%)

0.960 (0.016)

0.015 (0.008)

5.507 (2.695)

-1.385 (0.060)

-12.910 (0.000)


Qalaat El Andalous

29

17 (59%)

0.946 (0.024)

0.012 (0.007)

4.493 (2.278)

-0.946 (0.180)

-6.559 (0.003)


Tunis

51

44 (86%)

0.992 (0.006)

0.018 (0.010)

6.512 (3.131)

-1.717 (0.024)

-25.154 (0.000)


Zriba

35

17 (49%)

0.926 (0.028)

0.015 (0.008)

5.398 (2.665)

-1.156 (0.130)

-3.863 (0.076)


Kesra

43

30 (70%)

0.960 (0.020)

0.018 (0.010)

6.405 (3.094)

-1.611 (0.027)

-17.708 (0.000)


Skira

20

14 (70%)

0.937 (0.043)

0.011 (0.007)

4.137 (2.148)

-1.598 (0.045)

-6.234 (0.003)


Egypt

68

59 (87%)

0.993 (0.005)

0.020 (0.010)

7.075 (3.362)

-1.768 (0.016)

-25.013 (0.000)


Ethiopia

89

69 (78%)

0.990 (0.005)

0.023 (0.012)

8.145 (3.815)

-1.705 (0.018)

-24.759 (0.000)


Mauritania

30

23 (77%)

0.975 (0.017)

0.017 (0.009)

6.025 (2.953)

-0.738 (0.255)

-12.983 (0.000)


Nubia

80

53 (66%)

0.977 (0.008)

0.023 (0.012)

8.203 (3.844)

-1.420 (0.056)

-24.779 (0.000)


Senegal

50

42 (84%)

0.989 (0.008)

0.017 (0.009)

6.283 (3.032)

-1.127 (0.141)

-25.208 (0.000)


Serer

23

21 (91%)

0.992 (0.015)

0.023 (0.012)

8.340 (4.009)

-1.036 (0.152)

-11.679 (0.000)


Libya

129

20 (16%)

0.677 (0.046)

0.011 (0.006)

3.983 (2.005)

-1.254 (0.088)

-2.726 (0.223)


SE stands for standard error. Values in bold are statistically significant at the 5% level.

Harich et al. BMC Evolutionary Biology 2010 10:138   doi:10.1186/1471-2148-10-138

Open Data