Table 2 |
|||||
|
Number of transcript-SNP pairs (number of SNPs) |
|||||
|
Constituitive |
Altenative |
||||
|
|
|||||
|
Exclusive case1) |
Shared case2) |
Total case |
Exclusive case1) |
||
|
|
|||||
|
Canonical |
87 |
13 |
100 |
35 |
|
|
GT-AG |
(27) |
(6) |
(33) |
(24) |
|
|
|
|||||
|
Non-canonical |
GC-AG |
0 |
7 |
7 |
1 |
|
(0) |
(3) |
(3) |
(1) |
||
|
AT-AG |
1 |
2 |
3 |
3 |
|
|
(1) |
(2) |
(3) |
(3) |
||
|
CT-AG |
6 |
0 |
6 |
1 |
|
|
(3) |
(0) |
(3) |
(1) |
||
|
GA-AG |
0 |
0 |
0 |
1 |
|
|
(0) |
(0) |
(0) |
(1) |
||
|
GT-AA |
9 |
0 |
9 |
1 |
|
|
(4) |
(0) |
(4) |
(1) |
||
|
GT-AC |
5 |
0 |
5 |
3 |
|
|
(1) |
(0) |
(1) |
(3) |
||
|
GT-AT |
0 |
1 |
1 |
1 |
|
|
(0) |
(1) |
(1) |
(1) |
||
|
GT-GG |
6 |
0 |
6 |
0 |
|
|
(2) |
(0) |
(2) |
(0) |
||
|
GT-TG |
37 |
0 |
37 |
1 |
|
|
(1) |
(0) |
(1) |
(1) |
||
|
TT-AG |
1 |
0 |
1 |
0 |
|
|
(1) |
(0) |
(1) |
(0) |
||
|
Subtotal |
65 |
10 |
75 |
12 |
|
|
(13) |
(6) |
(19) |
(12) |
||
|
|
|||||
|
Total |
152 |
23 |
175 |
47 |
|
|
(40) |
(12) |
(52) |
(36) |
||
|
|
|||||
|
1) Only a single allele is predicted for all transcripts. This includes all SNPs flanked by AS exons. 2) Both alleles were predicted depending on transcript. This was found only in constitutive exons. |
|||||
|
Shimada et al. BMC Evolutionary Biology 2010 10:122 doi:10.1186/1471-2148-10-122 |
|||||
