Table 3

Accuracy of PHASE haplotype pair reconstructions.

Error

0.90 threshold

0.60 threshold



Dataset

category

90-NERR

90-NLCP incorrect

60-NERR

60-NLCP incorrect


Simulated

ECOR + NOV

-

1

-

1

ECOR + MIS

2

-

2

-

EMIS + MIS

-

2

-

2

EMIS + NOV

3

41

7

37

Total

5

44

9

40


Empirical

ECOR + NOV

-

-

-

-

ECOR + MIS

-

-

-

-

EMIS + MIS

-

-

-

-

EMIS + NOV

3

3

3

3

Total

3

3

3

3


False positives (NERR) and incorrect reconstructions that had appropriately low confidence probabilities (NLCP incorrect) are reported for simulated and empirical datasets under two alternative PHASE confidence probability thresholds. Error categories reflect the nature of inference mistakes, and are described in Methods.

Garrick et al. BMC Evolutionary Biology 2010 10:118   doi:10.1186/1471-2148-10-118

Open Data