Table 2

Characteristics of five empirical and 35 simulated datasets used in the present study.

Empirical

Ambiguous

Polymorphism measure

Simulated

Ambiguous

Polymorphism measure

datasets

N

genotypes

S

AN

GN

HO

datasets

N

genotypes

S

AN

GN

HO


Pseudachorutinae sp.

Sim01

50

5

5

6

6

0.26


Sm2 Pop1

80

0

2

3

4

0.03

Sim02

50

14

5

6

11

0.58

Sm2 Pop2

61

0

2

3

3

0.02

Sim03

50

2

5

6

9

0.66

Sm2 Pop3

118

2

9

5

7

0.14

Sim04

50

9

5

6

9

0.50

Sm2 Pop4

62

0

2

4

4

0.03

Sim05

50

6

5

6

8

0.50

Average

80

1

4

4

5

0.06

Sim06

50

25

10

8

12

0.76


SmEF1α Pop1

81

2

9

6

9

0.10

Sim07

50

34

10

9

17

0.90

SmEF1α Pop2

60

8

6

3

4

0.13

Sim08

50

25

10

10

22

0.76

SmEF1α Pop3

105

40

11

9

12

0.39

Sim09

50

38

10

9

15

0.80

SmEF1α Pop4

54

9

6

6

8

0.22

Sim10

50

31

10

9

23

0.80

Average

75

15

8

6

8

0.21

Sim11

50

36

15

11

17

0.82


Acanthanura sp.

Sim12

50

38

15

12

30

0.86


Uc3 Pop1

26

0

2

3

4

0.08

Sim13

50

31

15

10

20

0.78

Uc3 Pop2

19

0

0

1

1

0.00

Sim14

50

32

15

11

19

0.76

Uc3 Pop3

67

3

8

8

9

0.24

Sim15

50

36

15

12

23

0.80

Uc3 Pop4

78

6

7

7

12

0.14

Sim16

50

39

20

13

31

0.90

Uc3 Pop5

15

8

17

9

11

0.67

Sim17

50

30

20

16

33

0.72

Average

41

3

7

6

7

0.23

Sim18

50

24

20

13

22

0.62


Uc180 Pop1

24

5

7

5

8

0.54

Sim19

50

27

20

12

21

0.62

Uc180 Pop2

19

1

2

2

2

0.05

Sim20

50

41

20

15

30

0.86

Uc180 Pop3

67

0

2

3

3

0.03

Sim21

50

40

25

19

37

0.90

Uc180 Pop4

78

0

1

2

2

0.01

Sim22

50

32

25

15

22

0.70

Uc180 Pop5

15

0

0

1

1

0.00

Sim23

50

30

25

17

32

0.72

Average

41

1

2

3

3

0.13

Sim24

50

20

25

13

21

0.70


UcEF1α Pop1

26

6

6

6

8

0.23

Sim25

50

35

25

18

29

0.84

UcEF1α Pop2

19

1

7

4

4

0.16

Sim26

50

40

30

20

39

0.84

UcEF1α Pop3

67

21

15

10

11

0.36

Sim27

50

41

30

17

36

0.90

UcEF1α Pop4

78

12

14

10

11

0.26

Sim28

50

32

30

19

29

0.82

UcEF1α Pop5

15

0

0

1

1

0.00

Sim29

50

40

30

21

38

0.90

Average

41

8

8

6

7

0.20

Sim30

50

41

30

22

42

0.92


Sm2

321

2

13

11

14

0.07

Sim31

50

37

35

17

35

0.88

SmEF1α

300

59

17

17

27

0.24

Sim32

50

41

35

17

36

0.94

Uc3

205

17

26

17

30

0.19

Sim33

50

41

35

16

32

0.88

Uc180

203

6

12

9

13

0.08

Sim34

50

46

35

20

38

0.92

UcEF1α

205

40

27

21

32

0.26

Sim35

50

38

35

15

28

0.80

Average

247

25

19

15

23

0.17

Average

50

31

20

13

25

0.77


Genetically distinct populations of two Collembola species identified previously [5,40] were pooled prior to reanalysis using PHASE, but are separated here for comparison with the single-population simulated datasets. N is the number of diploid individuals, and 'ambiguous genotypes' are those containing at least two heterozygous sites. Polymorphism measures are: S, number of segregating sites; AN, number of different alleles; GN, number of different genotypes; HO, observed heterozygosity.

Garrick et al. BMC Evolutionary Biology 2010 10:118   doi:10.1186/1471-2148-10-118

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