Additional file 5.

Relationship between alternative measures of dataset polymorphism (x-axis) and the number of unresolved genotypes (y-axis). Simulated and empirical datasets are represented by solid circles and open circles, respectively. A-B, number of segregating sites (S) under the 0.90 and 0.60 thresholds; C-D, number of different alleles (AN) under the 0.90 and 0.60 thresholds; E-F, number of different genotypes (GN) under the 0.90 and 0.60 thresholds; G-H, observed heterozygosity (HO) under the 0.90 and 0.60 thresholds. All regressions were significantly positive (P < 0.05) for simulated data, but not for the empirical data.

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Garrick et al. BMC Evolutionary Biology 2010 10:118   doi:10.1186/1471-2148-10-118