Table 2

Degree of concordance between lists of differentially expressed genes in several models of ovarian dysgenesis.

Emx2 KO

Wnt4 KO

Foxl2 KO


Concordant

Discordant

Concordant

Discordant

Concordant

Discordant

Emx2 KO

-

-

1643

635

    (716)

    (1292)

Wnt4 KO

-

-

-

-

    (610)

    (1628)

Lhx8 KO

1295

789

1223

747

1491

452

Nobox KO

345

256

312

287

428

163

Foxo3 KO

500

346

396

347

530

257

Nobox KO

Foxo3 KO

Figla KO (*)

Concordant

Discordant

Concordant

Discordant

Concordant

Discordant

Lhx8 KO

1166

86

764

495

69

5

Nobox KO

-

-

266

69

39

2

Foxo3 KO

-

-

-

-

40

3


Concordance or discordance measured as the number of genes that showed the same or opposite directions of change pairwise comparisons of distinct knockout ("KO") models. The upper part of the table compares somatic genes among themselves and with oocyte genes, the lower part compares oocyte genes (the smaller list reported for Figla-null ovaries is indicated by *; see Methods). Bold font or underline indicate positive or negative correlations among lists, resp.

Garcia-Ortiz et al. BMC Developmental Biology 2009 9:36   doi:10.1186/1471-213X-9-36

Open Data