Table 3

Predicted target genes known to be involved in retinal function and disease.

CE-RSCs

P4

Adult


4: NLK

1: NEFL

6: CAMTA1

1: COL18A1

5: NCOR2

1: DDIT4


3: DMD

1: PCDHGC3

6: NCOR2

1: COL2A1

4: CAMTA1

1: DUSP1


2: ADD1

1: PPP1R3F

5: ELOVL4

1: DUSP1

4: ELOVL4

1: FAM57B


2: CAMTA1

1: PSAP

5: NCALD

1: FAM57B

4: NCALD

1: H2AFZ


2: GNB1

1: RARB

4: NLK

1: H2AFZ

4: NLK

1: HSP90AB1


2: GPX3

1: RARG

4: RARG

1: IGFBP5

4: TP53INP2

1: IGFBP5


2: GRIA4

1: RDH10

4: TSPAN9

1: IMPDH1

4: TSPAN9

1: IMPDH1


2: HSPA8

1: RGS16

3: FZD4

1: KIAA0143

3: DMD

1: KIF1B


2: JAG1

1: RHO

3: TEAD1

1: KIF1B

3: FZD4

1: MAK


2: PAX2

1: RIMS1

3: TP53INP2

1: MAK

3: JAG1

1: MAPT


2: RB1

1: SGIP1

3: ZNF385

1: MAPT

3: RARG

1: PCDHGC3


2: SLC17A7

1: SLC12A5

2: CFL1

1: PAX2

3: TEAD1

1: PITPNA


2: TEAD1

1: SLC25A18

2: CSDA

1: PITPNA

2: CSDA

1: PPP1R3F


1: APP

1: SPP1

2: DMD

1: PPP1R3F

2: GPX3

1: PRELP


1: ATP8B1

1: STAC2

2: GPX3

1: PRELP

2: GRIA4

1: PSAP


1: BHLHB3

1: SYP

2: GRIA4

1: PSAP

2: PAX2

1: RARA


1: CAMSAP1

1: TFAP2B

2: JAG1

1: RARB

2: SLC12A5

1: RARB


1: CCNI

1: TP53INP2

2: RARA

1: RB1

2: SLC17A7

1: RB1


1: CFL1

1: TSPAN9

2: RIMS1

1: RDH10

2: TRPM3

1: RDH10


1: CLASP2

1: USH2A

2: SGIP1

1: RGS16

2: ZNF385

1: RGS16


1: COL2A1

1: ZNF385

2: SLC12A5

1: RGS9

1: ACTB

1: RGS9


1: CP

2: SLC17A7

1: RHO

1: ACTG1

1: RHO


1: DDIT4

2: TAGLN

1: RS1

1: ADD1

1: RIMS1


1: DUSP1

2: TRPM3

1: SLC1A3

1: AFF1

1: RS1


1: EEF1A1

1: ACTB

1: SLC25A18

1: ANXA2

1: SGIP1


1: EIF1

1: ACTG1

1: SMOC2

1: ATP8B1

1: SLC25A18


1: ELOVL4

1: AFF1

1: SPARC

1: ATXN7

1: SMOC2


1: FZD4

1: ANXA2

1: SPG20

1: CAMK2D

1: SPARC


1: HSP90AB1

1: ATP8B1

1: STAC2

1: CCNI

1: SPG20


1: IGFBP5

1: ATXN7

1: SYP

1: CFL1

1: STAC2


1: KIF1B

1: CAMK2D

1: TFAP2B

1: CLASP2

1: SYP


1: MSH6

1: CCNI

1: COL11A1

1: TAGLN


1: NCALD

1: CLASP2

1: COL18A1

1: TFAP2B


1: NCOR2

1: COL11A1

1: COL2A1


Genes predicted to be targeted by one or more candidate miRNA affecting mRNA levels were compared with genes implicated in retinal function[14]. The overlapping genes are listed, with the number of different miRNAs predicted to target them followed by the gene symbol.

Arora et al. BMC Developmental Biology 2010 10:1   doi:10.1186/1471-213X-10-1

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