Table 2

Predicted cis-acting regulatory sequences of cell cycle-regulated gene clusters

cluster

No. promoters

consensus sequence

No. promoters with motif

average No.of occurance per promoter

∅ P-value

strand +/-


1

3

AMRRCRAC

3

5

1,60E-04

10/5

1

3

WGSAGKGSAACCTC

3

1

2,79E-08

3/0

2

6

MCGARKWMRAC

5

2

1,08E-05

7/2

3

7

THTHCWYKRWSGTGK

6

2

1,20E-06

3/7

4

4

SWWCGASSMSG

4

5

1,60E-04

14/6

5

20

CRBCGASSDCRHCGH

18

3

7,88E-05

31/19

6

1

---------

----

----

----

----

7

10

RHSRYSRMCGA

10

5

4,16E-04

35/15


R = G or A; Y = T or C; M = A or C; K = G or T; S = G or C; W = A or T; H = A or C or T; B = G or T or C; D = G or A or T

Baumann et al. BMC Cell Biology 2007 8:21   doi:10.1186/1471-2121-8-21

Open Data