Table 1

Genes with cell cycle-specific transcripts

No.

cluster*1

identifier*2

g.c./ow*3

gene name

functional class


1

1

OE2697R

probable coenzyme PQQ synthesis protein E

coenzyme metabolism

2

1

OE3763F

I

glycerol-3-phosphate dehydrogenase chain A

central intermediary metabolism

3

1

OE3764F

I

glycerol-3-phosphate dehydrogenasechain B

central intermediary metabolism

4

1

OE3765F

I

glycerol-3-phosphate dehydrogenase chain C

central intermediary metabolism

5

1

OE4345R

probable ribonucleoside-diphosphate reductase

nucleotide metabolism

6

2

OE1806R

probable periplasmic protein

cell envelope

7

2

OE2844R

transcription regulator homolog/trkA C-terminal domain

gene regulation

8

2

OE3308F

malate dehydrogenase

central intermediary metabolism

9

2

OE3759R

hypothetical protein

hypothetical protein

10

2

OE3922R

glutamate-ammonia ligase (EC 6.3.1.2)

amino acid metabolism

11

2

OE5212F

SMC-like protein sph1

cellular processes

12

3

OE1620R

phosphoribosylglycinamide formyltransferase

nucleotide metabolism

13

3

OE1951F

I

phosphoribosylaminoimidazole carboxylase (EC 4.1.1.21)

nucleotide metabolism

14

3

OE1952F

I

phosphoribosylaminoimidazole carboxylase (EC 4.1.1.21)

nucleotide metabolism

15

3

OE2274R

phosphoribosylformylglycinamidine synthase (EC 6.3.5.3)

nucleotide metabolism

16

3

OE2864F

phosphoribosylamine--glycine ligase (EC 6.3.4.13)

nucleotide metabolism

17

3

OE3017R

UDP-sugar hydrolase (EC 3.6.1.45)/5'-nucleotidase

nucleotide metabolism

18

3

OE3139R

amidophosphoribosyltransferase (EC 2.4.2.14)

nucleotide metabolism

19

3

OE3724F

phosphoribosylaminoimidazolesuccinocarboxamide

nucleotide metabolism

synthase

20

4

OE1500R

pyruvate, water dikinase (EC 2.7.9.2) (PEP synthase)

central intermediary metabolism

21

4

OE2019F

fructose-bisphosphate aldolase (EC 4.1.2.13) 1

central intermediary metabolism

22

4

OE4416R

I

conserved protein

conserved hypothetical protein

23

4

OE4418R

I

hypothetical protein

hypothetical protein

24

4

OE4419R

I

argininosuccinate lyase (EC 4.3.2.1)

amino acid metabolism

25

4

OE6026R

transcription initiation factor TFB

transcription

26

5

OE1058R

probable transposase (ISH1)

transposases/ISH proteins

27

5

OE1270F

I

glutamate dehydrogenase (EC 1.4.1.-)

amino acid metabolism

28

5

OE1271F

I

probable fatty-acid--CoA ligase (EC 6.2.1.-)

lipid metabolism

29

5

OE1352F

I

hypothetical protein

hypothetical protein

30

5

OE1353F

I

hypothetical protein

hypothetical protein

31

5

OE1356F

I

conserved hypothetical protein

conserved hypothetical protein

32

5

OE1447R

I

conserved hypothetical protein

conserved hypothetical protein

33

5

OE1448R

I

conserved hypothetical protein

conserved hypothetical protein

34

5

OE1775R

hypothetical protein

hypothetical protein

35

5

OE2046F

conserved hypothetical protein

conserved hypothetical protein

36

5

OE2492F

conserved protein

conserved hypothetical protein

37

5

OE3168R

pyridoxal phosphate-dependent aminotransferase

miscellaneous

38

5

OE3554F

carbamoyl-phosphate synthase

amino acid metabolism

39

5

OE3612R

chemotactic signal transduction system

signal transduction

periplasmic substrate-binding protein basB

40

5

OE3653R

I

phosphoglycerate mutase (EC 5.4.2.1)

central intermediary metabolism

41

5

OE3654R

I

hypothetical protein

hypothetical protein

42

5

OE3925R

thermosome beta chain

cellular processes

43

5

OE4122R

thermosome alpha chain

cellular processes

44

5

OE4159F

adenosylhomocysteinase (EC 3.3.1.1)

amino acid metabolism

45

5

OE4300R

I

hypothetical protein

hypothetical protein

46

5

OE4301R

I

ABC-type transport system ATP-binding protein

small molecule transport

47

5

OE4302R

I

ABC-type transport system ATP-binding protein

small molecule transport

48

5

OE4303R

I

ABC-type transport system permease protein

small molecule transport

49

5

OE4304R

I

ABC-type transport system permease protein

small molecule transport

50

5

OE4311F

I

ABC-type transport system substrate-binding protein

small molecule transport

51

5

OE4316F

I

ABC-type transport system permease protein

small molecule transport

52

5

OE4318F

I

ABC-type transport system ATP-binding protein

small molecule transport

53

5

OE4408F

I

phosphoglycerate dehydrogenase (EC 1.1.1.95)

amino acid metabolism

54

5

OE4410F

I

acyl-CoA thioester hydrolase homolog

conserved hypothetical protein

55

5

OE4550F

I

ABC-type transport system ATP-binding protein

small molecule transport

56

5

OE4552F

I

ABC-type transport system permease protein

small molecule transport

57

5

OE4555F

I

ABC-type transport system permease protein

small molecule transport

58

5

OE4676F

hypothetical protein

hypothetical protein

59

5

OE4688F

conserved protein

conserved hypothetical protein

60

6

OE1794R

I

conserved hypothetical protein

conserved hypothetical protein

61

6

OE1797R

I

transcription regulator sirR

gene regulation

62

7

OE1674R

I

probable phosphate transport operon protein phoU

transport

63

7

OE1675R

I

ABC-type transport system ATP-binding protein

small molecule transport

64

7

OE1676R

I

ABC-type transport system permease protein

small molecule transport

65

7

OE1678R

I

ABC-type transport system permease protein

small molecule transport

66

7

OE1679R

I

ABC-type transport system periplasmic binding protein

small molecule transport

67

7

OE2367F

aldehyde dehydrogenase

miscellaneous

68

7

OE2458R

IMP dehydrogenase (EC 1.1.1.205)

nucleotide metabolism

69

7

OE2924R

conserved hypothetical protein

conserved hypothetical protein

70

7

OE3571R

I

GMP synthase (glutamine-hydrolyzing) (EC 6.3.5.2)

nucleotide metabolism

71

7

OE3572R

I

CTP synthase (EC 6.3.4.2)

nucleotide metabolism

72

7

OE4462F

conserved hypothetical protein

conserved hypothetical protein

73

7

OE4466R

DNA repair protein

replication, repair, recombination

74

7

OE5160F

glycerol dehydrogenase (EC 1.1.1.6)

miscellaneous

75

7

OE5204R

I

arginine ornithine exchanger

small molecule transport

76

7

OE5205R

I

ornithine carbamoyltransferase (EC 2.1.3.3)

amino acid metabolism

77

7

OE5206R

I

carbamate kinase (EC 2.7.2.2)

amino acid metabolism

78

7

OE5208R

I

arginine deiminase (EC 3.5.3.6)

amino acid metabolism

79

OE1249R

conserved hypothetical protein

conserved hypothetical protein

80

OE1302F

lipoate-protein ligase homolog

miscellaneous

81

OE2703F

probable copper-containing oxidoreductase

miscellaneous

82

OE2973F

conserved hypothetical protein

conserved hypothetical protein

83

OE3337F

insertion element protein (ISH2)

transposases/ISH proteins

84

OE4077F

hypothetical protein

hypothetical protein

85

OE4380F

cell division control protein cdc6 homolog

cellular processes

86

OE7065F

I

cytochrome d ubiquinol oxidase (EC 1.10.3.-) chain I

energy metabolism

87

OE7066F

I

cytochrome d ubiquinol oxidase (EC 1.10.3.-) chain II

energy metabolism


*1 regulatory cluster (compare Fig. 2)

*2 identifier in the genome sequence [23]

*3 gene cluster or operon

Baumann et al. BMC Cell Biology 2007 8:21   doi:10.1186/1471-2121-8-21

Open Data