Table 2

List of prediction servers of HLA class II binding peptides, their URLs (as of December 2007), and name abbreviations.

ID

Servers

Abbreviation

URLs

Prediction algorithm

Reference


1

HLA-DR4Pred (ANN)

DR4_ANN

[63]

ANN

[64]

2

HLA-DR4Pred (SVM)

DR4_SVM

[63]

SVM

[64]

3

IEDB (ARB)

IEDB_II

[65]

Matrix

[66]

4

IEDB (SMM)

IEDB_SMM

[65]

Matrix

[41]

5

IEDB (Saturniolo)

IEDB_SAT

[65]

Matrix

[67]

6

IEDB (Consensus)

IEDB_CON

[65]

Matrix

-

7

MHC Binder Prediction

MHC_BP

[68]

Matrix

-

8

MHC2Pred

MHC2Pred

[69]

SVM

-

9

MHC-BPS

MHC_BPS

[70]

SVM

[71]

10

MHCPred

MHCPRED

[72]

Partial least square

[73]

11

Multipred1 (ANN)

MULTI_ANN

[74]

ANN

[39]

12

Multipred1 (HMM)

MULTI_HMM

[74]

HMM

[39]

13

Multipred1 (SVM)

MULTI_SVM

[74]

SVM

[75]

14

NetMHCII

NETMHCII

[76]

Matrix

[41]

15

NetMHCIIpan

NETMHCIIPAN

[77]

ANN

[29]

16

PeptideCheck (Matrix)

PEPC_M

[78]

Matrix

[79]

17

ProPred

PROPRED

[80]

Matrix

[81]

18

Rankpep

RANKPEP

[82]

Matrix

[83]

19

SVMHC

SVMHC

[84]

Matrix

[85]

20

SVRMHC

SVRMHC

[86]

SVM

[87]

21

SYFPEITHI

SYFPEITHI

[88]

Matrix

[12]


Lin et al. BMC Bioinformatics 2008 9(Suppl 12):S22   doi:10.1186/1471-2105-9-S12-S22

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