A typical example of the output results obtained by Ori-Finder. (A) The information of genome and oriC region for Escherichia coli K12 as an HTML table. (B) The integrated plot as a PNG figure for the original sequence and (C) the integrated plot as a PNG figure for the rotated sequence, displaying the obtained results, such as general genome information, four disparity curves, distribution of DnaA boxes, locations of putative indicator genes and the predicted oriC region. Note that the coordinate origin of the rotated sequence begins and ends in the maximum of the GC disparity curve.
Gao and Zhang BMC Bioinformatics 2008 9:79 doi:10.1186/1471-2105-9-79