Table 3 |
||||||
|
The summary of the functionalities of GraphCrunch and similar purpose software tools. "Yes" and "No" denote that a software package supports or does not support a given function, respectively. |
||||||
|
Software tool |
Global properties |
Local properties |
Visualization |
Number of network models |
Output of model networks |
Input graph format |
|
|
||||||
|
GraphCrunch |
Yes |
Yes |
Yes (Results) |
5 |
Yes |
LEDA graph format (.gw); Edge list (.txt) |
|
mfinder |
No |
Yes |
Yes, with mDraw |
3 |
Yes (not by default) |
Edge list (.txt) |
|
MAVisto |
No |
Yes |
Yes |
1 |
No |
Pajek format (.net) and .gml |
|
FANMOD |
No |
Yes |
Yes |
3 |
No |
Edge list (.txt) |
|
tYNA |
Yes (limited) |
Yes (limited) |
Yes |
0 |
No |
Edge list (.txt) and .sif |
|
pajek |
Yes |
Yes (limited) |
Yes |
2 |
Yes |
Pajek format (.net) |
|
|
||||||
|
Milenković et al. BMC Bioinformatics 2008 9:70 doi:10.1186/1471-2105-9-70 |
||||||
