Software
GeneChaser: Identifying all biological and clinical conditions in which genes of interest are differentially expressed
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* Corresponding author: Atul J Butte abutte@stanford.edu
1 Stanford Center for Biomedical Informatics Research, Department of Medicine, Stanford University School of Medicine, 251 Campus Drive, Stanford, CA 94305, USA
2 Department of Pediatrics, Stanford University School of Medicine, 251 Campus Drive, Stanford, CA 94305, USA
3 Lucile Packard Children's Hospital, 725 Welch Road, Palo Alto, CA 94304, USA
4 Optra Systems Pvt. Ltd, 1, "Dnyanesh", CTS No. 1179/3, Modern College Road, Shivajinagar, Pune, 411 005, India
BMC Bioinformatics 2008, 9:548 doi:10.1186/1471-2105-9-548
Published: 18 December 2008Additional files
Additional file 1:
Top conditions in which Nanog was significantly differentially expressed. A single gene search result shows the top 12 biological and clinical conditions in which Nanog, or one of its orthologs, was differentially expressed (q ≤ 0.05, fold > 2).
Format: PDF Size: 444KB Download file
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Additional file 2:
Agent comparisons showing differential expression of Nanog. A single gene search result shows that Nanog, or one of its orthologs, was differentially expressed after drug treatments in four studies (q ≤ 0.05, fold > 2).
Format: PDF Size: 448KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional file 3:
Mouse studies showing differential expression of Nanog, Oct4, Sox2, and Lin28. A multiple gene search result shows that Nanog, Oct4, Sox2, and Lin28 were differentially expressed in five mouse studies (q ≤ 0.05).
Format: PDF Size: 46KB Download file
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Additional file 4:
Human studies showing differential expression of Nanog, Oct4, Sox2, and Lin28. A multiple gene search result shows the top 14 human studies in which Nanog, Oct4, Sox2, and Lin28 were differentially expressed (q ≤ 0.05).
Format: PDF Size: 52KB Download file
This file can be viewed with: Adobe Acrobat Reader