Table 6

Comparison of enhancer predictions in the untreated Hela cells.

Heintzman et al. [15] total 389 prediction

HMM method total 389 prediction


distal p300 (n = 94)

77 (sensitivity = 81.91%)

82 (sensitivity = 87.23%)


distal DHS (n = 587)

165 (sensitivity = 28.11%)

179 (sensitivity = 30.49%)


Distal TRAP220 (n = 77)

43 (sensitivity = 55.84%)

47 (sensitivity = 61.04%)


Any of distal (DHS, p300, TRAP220)

206 (PPV = 52.96%)

213 (PPV = 54.76%)


Sensitivity = (TP/(TP+FN)) or PPV = (TP/(TP+FP)) was calculated.

Won et al. BMC Bioinformatics 2008 9:547   doi:10.1186/1471-2105-9-547

Open Data