Software
SynteBase/SynteView: a tool to visualize gene order conservation in prokaryotic genomes
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* Corresponding author: Bernard Labedan bernard.labedan@igmors.u-psud.fr
1 Institut de Génétique et Microbiologie, Université Paris Sud XI, CNRS UMR 8621, Bât. 400, 91405 Orsay Cedex, France
2 Laboratoire de Recherche en Informatique, Université Paris Sud XI, CNRS UMR 8623, Bât. 490, 91405 Orsay Cedex, France
BMC Bioinformatics 2008, 9:536 doi:10.1186/1471-2105-9-536
Published: 16 December 2008Additional files
Additional file 1:
SynteView user guide. This guide helps the user in 1) Installing SynteView, 2) Using SynteView, 3) Adapting SynteBase/SynteView to his/her own purposes. It is available at http://www.synteview.u-psud.fr/documents.php webcite
Format: PDF Size: 655KB Download file
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Additional file 2:
SQL Query computing POGs. This file contains the SQL query for computation of POGs using SynteBase. The main idea is to join the ortho table with itself, and to take only the tuples which form a gene quadruplet where each vertical pair is made up of orthologues and each horizontal pair consists of adjacent genes in their respective genomes.
Format: PDF Size: 38KB Download file
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