Open Access Highly Accessed Software

CellProfiler Analyst: data exploration and analysis software for complex image-based screens

Thouis R Jones123, In Han Kang3, Douglas B Wheeler2, Robert A Lindquist2, Adam Papallo12, David M Sabatini24, Polina Golland3 and Anne E Carpenter12*

Author Affiliations

1 Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA

2 Whitehead Institute for Biomedical Research, Cambridge, MA 02142, USA

3 Computer Sciences and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA 02142, USA

4 Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02142, USA

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BMC Bioinformatics 2008, 9:482  doi:10.1186/1471-2105-9-482

Published: 15 November 2008

Additional files

Additional file 1:

Features tested to identify the best for constructing the metaphase and telophase gates.

Format: XLS Size: 36KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 2:

List of all genes tested, with scores for metaphase and telophase nuclei enrichment.

Format: XLS Size: 926KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 3:

Source code for CellProfiler Analyst (most recent version is available at http://www.cellprofiler.org webcite). Additional File 3 must be uncompressed. Doubleclicking the file often activates the computer's native decompression software; otherwise download free software online (e.g., StuffIt Expander) for this purpose.

Format: ZIP Size: 319KB Download file

Open Data