Methodology article
RIPCAL: a tool for alignment-based analysis of repeat-induced point mutations in fungal genomic sequences
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* Corresponding author: Richard P Oliver roliver@murdoch.edu.au
Australian Centre for Necrotrophic Fungal Pathogens, Faculty of Health Sciences, Murdoch University, South Street, Murdoch, 6150, Australia
BMC Bioinformatics 2008, 9:478 doi:10.1186/1471-2105-9-478
Published: 12 November 2008Additional files
Additional file 1:
Control Data. Compressed (.zip) file containing data relevant to control tests with Neurospora crassa Tad1 and 5S rDNA repeats, containing RIPCAL graphical (.png), tabular text (.txt) and fasta (.fas) alignments of repeat family matches. Also contains files (.png, .txt and .fas) for the MATE repeats from Aspergillus nidulans and Ty1 transposons from Microbotryum violaceum.
Format: ZIP Size: 1.1MB Download file
Additional file 2:
Supplementary Data Tables. Excel (.xls) file with tabular data relating to RIPCAL analyses of Stagonospora nodorum repeats.
Format: XLS Size: 123KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional file 3:
Supplementary Methods. Word (.doc) file explaining some of the methods in more detail.
Format: DOC Size: 178KB Download file
This file can be viewed with: Microsoft Word Viewer
Additional file 4:
Snodorum Repeats. GFF3 (.gff) file containing NCBI genomic accessions and coordinates of Stagonospora nodorum repeats used in this publication.
Format: GFF Size: 110KB Download file
Additional file 5:
Snodorum Alignments. Compressed (.zip) file containing alignments for all Stagonospora nodorum repeat families in Fasta (.fas) format.
Format: ZIP Size: 439KB Download file