Research article
Biclustering via optimal re-ordering of data matrices in systems biology: rigorous methods and comparative studies
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* Corresponding author: Christodoulos A Floudas floudas@titan.princeton.edu
1 Department of Chemical Engineering, Princeton University, Princeton, NJ, USA
2 Department of Chemistry, Princeton University, Princeton, NJ, USA
BMC Bioinformatics 2008, 9:458 doi:10.1186/1471-2105-9-458
Published: 27 October 2008Additional files
Additional file 1:
This additional file contains all of the additional figures and results referenced in the article.
Format: PDF Size: 1.4MB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional file 2:
This text file contains the results for the biclustering algorithms Cheng and Church's, ISA, OPSM, BiMax, xMotif, and SAMBA for the Alon et. al colon cancer data set.
Format: TXT Size: 94KB Download file
Additional file 3:
This Excel spreadsheet contains the complete ontology results for all biclustering algorithms using Onto-Express for the Alon et al. and van't Veer cancer data sets.
Format: XLS Size: 36KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional file 4:
This text file contains the results for the biclustering algorithms Cheng and Church's, ISA, OPSM, BiMax, xMotif, and SAMBA for the van't Veer et al. breast cancer data set.
Format: TXT Size: 203KB Download file
Additional file 5:
This text file contains the corresponding clusters for OREO described in the article for the Eisen et al. budding yeast data set (described in Additional file1).
Format: TXT Size: 12KB Download file