Table 1

Fungal genome sources

Species

Source

Nb proteins

Release or Date

Online database

Ashbya gossypii

AGD

4726

2.1

http://agd.vital-it.ch/index.html webcite

Aspergillus fumigatus

NCBI

9923

06/30/2006

ftp://ftp.ncbi.nih.gov/genomes/Fungi/ webcite

Aspergillus nidulans

BROAD

10701

1

http://www.broad.mit.edu/annotation/fungi/fgi/ webcite

Aspergillus oryzae

NITE

12074

07/13/2006

http://www.nite.go.jp/index-e.html webcite

Botrytis cinerea

BROAD

16448

1

http://www.broad.mit.edu/annotation/fungi/fgi/ webcite

Candida glabrata

NCBI

5181

07/05/2006

ftp://ftp.ncbi.nih.gov/genomes/Fungi/ webcite

Candida lusitaniae

BROAD

5941

1

http://www.broad.mit.edu/annotation/fungi/fgi/ webcite

Chaetomium globosum

BROAD

11124

1

http://www.broad.mit.edu/annotation/fungi/fgi/ webcite

Coccidioides immitis

BROAD

10457

2

http://www.broad.mit.edu/annotation/fungi/fgi/ webcite

Cryptococcus neoformans

NCBI

6475

07/30/2006

ftp://ftp.ncbi.nih.gov/genomes/Fungi/ webcite

Debaryomyces hansenii

NCBI

6317

07/30/2006

ftp://ftp.ncbi.nih.gov/genomes/Fungi/ webcite

Eremothecium gossypii

NCBI

4718

07/30/2006

ftp://ftp.ncbi.nih.gov/genomes/Fungi/ webcite

Fusarium graminearum

BROAD

11640

1

http://www.broad.mit.edu/annotation/fungi/fgi/ webcite

Kluyveromyces lactis

NCBI

5331

07/30/2006

ftp://ftp.ncbi.nih.gov/genomes/Fungi/ webcite

Magnaporthe grisea

BROAD

12841

5

http://www.broad.mit.edu/annotation/fungi/fgi/ webcite

Neurospora crassa

BROAD

10620

7

http://www.broad.mit.edu/annotation/fungi/fgi/ webcite

Phanerochaete chrysosporium

JGI

10048

2.1

http://genome.jgi-psf.org/ webcite

Rhizopus oryzae

BROAD

17467

3

http://www.broad.mit.edu/annotation/fungi/fgi/ webcite

Saccharomyces bayanus

MIT

9424

07/13/2006

ftp:/ / genome-ftp.stanford.edu/ pub/ yeast/ data_download/ sequence/ fungal_genomes/ S_bayanus/ MIT/ webcite

Saccharomyces castellii

WashU

4677

07/13/2006

ftp:/ / genome-ftp.stanford.edu/ pub/ yeast/ data_download/ sequence/ fungal_genomes/ S_castellii/ WashU/ webcite

Saccharomyces cerevisiae

NCBI

5869

07/30/2006

ftp://ftp.ncbi.nih.gov/genomes/Fungi/ webcite

Saccharomyces kluyveri

WashU

2968

07/13/2006

ftp:/ / genome-ftp.stanford.edu/ pub/ yeast/ data_download/ sequence/ fungal_genomes/ S_kluyveri/ WashU/ webcite

Saccharomyces kudriavzevi

WashU

3768

07/13/2006

ftp:/ / genome-ftp.stanford.edu/ pub/ yeast/ data_download/ sequence/ fungal_genomes/ S_kudriavzevii/ WashU/ webcite

Saccharomyces mikatae

MIT

9057

07/13/2006

ftp:/ / genome-ftp.stanford.edu/ pub/ yeast/ data_download/ sequence/ fungal_genomes/ S_mikatae/ MIT/ webcite

Saccharomyces paradoxus

MIT

8955

07/30/2006

ftp:/ / genome-ftp.stanford.edu/ pub/ yeast/ data_download/ sequence/ fungal_genomes/ S_paradoxus/ MIT/ webcite

Schizosaccharomyces pombe

NCBI

5045

07/30/2006

ftp://ftp.ncbi.nih.gov/genomes/Fungi/ webcite

Sclerotinia sclerotiorum

BROAD

14522

1

http://www.broad.mit.edu/annotation/fungi/fgi/ webcite

Stagonospora nodorum

BROAD

16597

1

http://www.broad.mit.edu/annotation/fungi/fgi/ webcite

Trchoderma reesei

JGI

9997

1.2

http://genome.jgi-psf.org/ webcite

Ustilago maydis

BROAD

6522

1

http://www.broad.mit.edu/annotation/fungi/fgi/ webcite

Yarrowia lipolytica

NCBI

6520

07/30/2006

ftp://ftp.ncbi.nih.gov/genomes/Fungi/ webcite

Marthey et al. BMC Bioinformatics 2008 9:456   doi:10.1186/1471-2105-9-456