Additional file 4.

Aligning genomes by waypoints. A waypoint named dpoII is set at the appropriate location in each of three Sulfolobus spp. genomes, and the "Align at Waypoint" action is selected to align the genomes at the dpoII gene by appropriately rotating the outer genomes. This makes visual comparison of the gene's structure in all three species easier.

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Soh et al. BMC Bioinformatics 2008 9:450   doi:10.1186/1471-2105-9-450