BMC Bioinformatics

official impact factor 3.03

Open Access Methodology article

A probabilistic framework to predict protein function from interaction data integrated with semantic knowledge

Young-Rae Cho1*, Lei Shi1, Murali Ramanathan2 and Aidong Zhang1

Author Affiliations

1 Department of Computer Science and Engineering, State University of New York, Buffalo, NY, USA

2 Department of Pharmaceutical Sciences, State University of New York, Buffalo, NY, USA

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BMC Bioinformatics 2008, 9:382 doi:10.1186/1471-2105-9-382

Published: 18 September 2008

Additional files

Additional file 1:

Function prediction results for unknown proteins. For each unknown protein, our probabilistic approach predicted a set of functions with prediction confidence of greater than 10. The predicted functions are described as the IDs used in MIPS.

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