Performance comparison with the Striped Smith-Waterman implementation. Performance comparison between our CBESW implementation with Striped Smith-Waterman, in terms of MCUPS. All queries were run against Swiss-Prot release 55.2. Nine query sequences with lengths of 63 to 852 amino acids were used.
Wirawan et al. BMC Bioinformatics 2008 9:377 doi:10.1186/1471-2105-9-377