Software
GenomeMatcher: A graphical user interface for DNA sequence comparison
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* Corresponding author: Yoshiyuki Ohtsubo yohtsubo@ige.tohoku.ac.jp
Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, 2-1-1 Katahira, Sendai, 980-8577, Japan
BMC Bioinformatics 2008, 9:376 doi:10.1186/1471-2105-9-376
Published: 16 September 2008Additional files
Additional file 1:
Example of catenation mode: genomes vs genomes comparison. The genomic sequences of ten Escherichia coli strains were concatenated (51.2 Mb in total) and compared by using the catenation mode. The order of catenation is E. coli 536, APEC O1, CFT073, UTI89, E24377A, HS, K12 MG1655, K-12 W3110, O157:H7 EDL933, and O157:H7 Sakai RIMD 0509952. To gain better resolution, the image width was set to 2,350 points. Blue and white lines, which are depicted automatically, indicate replicon and genomic boundaries, respectively.
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