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Identification and correction of abnormal, incomplete and mispredicted proteins in public databases

Alinda Nagy, Hédi Hegyi, Krisztina Farkas, Hedvig Tordai, Evelin Kozma, László Bányai and László Patthy*

BMC Bioinformatics 2008, 9:353  doi:10.1186/1471-2105-9-353

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Research   Open Access

A new rhesus macaque assembly and annotation for next-generation sequencing analyses

Aleksey V Zimin, Adam S Cornish, Mnirnal D Maudhoo, Robert M Gibbs, Xiongfei Zhang, Sanjit Pandey, Daniel T Meehan, Kristin Wipfler, Steven E Bosinger, Zachary P Johnson, Gregory K Tharp, Guillaume Marçais, Michael Roberts, Betsy Ferguson, Howard S Fox, Todd Treangen, Steven L Salzberg, James A Yorke, Robert B Norgren, Biology Direct 2014, 9:20 (14 October 2014)

A new, greatly improved assembly and annotation of the rhesus macaque genome, MacaM, has been produced; this resource can serve as a reference genome for next-generation sequencing studies.

Research article   Open Access

Assessment and refinement of eukaryotic gene structure prediction with gene-structure-aware multiple protein sequence alignment

Osamu Gotoh, Mariko Morita, David R Nelson BMC Bioinformatics 2014, 15:189 (14 June 2014)

Correspondence   Open Access Highly Accessed

Limitations of the rhesus macaque draft genome assembly and annotation

Xiongfei Zhang, Joel Goodsell, Robert B Norgren, BMC Genomics 2012, 13:206 (30 May 2012)

Research article   Open Access Highly Accessed

Controversies in modern evolutionary biology: the imperative for error detection and quality control

Francisco Prosdocimi, Benjamin Linard, Pierre Pontarotti, Olivier Poch, Julie D Thompson BMC Genomics 2012, 13:5 (4 January 2012)

Research   Open Access

Filtering "genic" open reading frames from genomic DNA samples for advanced annotation

Sara D'Angelo, Nileena Velappan, Flavio Mignone, Claudio Santoro, Daniele Sblattero, Csaba Kiss, Andrew RM Bradbury BMC Genomics 2011, 12(Suppl 1):S5 (15 June 2011)