Table 3 |
|||||
|
Percentage of perfectly aligned queries. |
|||||
|
BLAT |
Exnrt. |
BLAT |
Exnrt. |
||
|
|
|
||||
|
Species |
Scipio (automatic assembling) |
with manual assembling |
without assembling |
||
|
|
|||||
|
Bombyx mori p50T |
25.0 |
0.0 |
25.0 |
0.0 |
12.5 |
|
Drosophila simulans |
37.8 |
2.7 |
21.6 |
2.7 |
16.2 |
|
Bombyx mori str. Dazao |
15.6 |
3.1 |
12.5 |
0.0 |
9.4 |
|
Nasonia vitripennis (contigs) |
71.4 |
11.4 |
57.1 |
11.4 |
54.3 |
|
Nasonia vitripennis (scaffolds) |
68.6 |
11.4 |
65.7 |
11.4 |
65.7 |
|
Drosophila sechellia |
63.2 |
7.9 |
55.3 |
2.6 |
55.3 |
|
Aedes aegypti |
87.5 |
7.5 |
52.5 |
7.5 |
50.0 |
|
Daphnia pulex |
88.1 |
0.0 |
76.2 |
0.0 |
76.2 |
|
Anopheles gambiae |
94.6 |
8.1 |
73.0 |
8.1 |
73.0 |
|
Drosophila melanogaster |
100.0 |
10.5 |
86.8 |
10.5 |
86.8 |
|
Aspergillus niger |
86.7 |
6.7 |
73.3 |
6.7 |
73.3 |
|
Homo sapiens |
62.5 |
0.0 |
50.0 |
0.0 |
50.0 |
|
Macaca mulatta |
12.5 |
0.0 |
10.0 |
0.0 |
10.0 |
|
|
|||||
|
total |
64.5 |
5.5 |
51.7 |
4.8 |
50.3 |
|
|
|||||
|
The number of query sequences that were predicted by the programs exactly at the correct location, with 100 % matching residues, without frameshifts or false positives. This figure reveals the amount of workload needed for manual postprocessing of the hits. |
|||||
|
Keller et al. BMC Bioinformatics 2008 9:278 doi:10.1186/1471-2105-9-278 |
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