Methodology article
An analytic and systematic framework for estimating metabolic flux ratios from 13C tracer experiments
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* Corresponding author: Ari Rantanen ari.rantanen@iki.fi
1 Department of Computer Science, University of Helsinki, Finland
2 Institute of Molecular Systems Biology, ETH Zurich, Switzerland
3 VTT Technical Research Centre of Finland, Finland
BMC Bioinformatics 2008, 9:266 doi:10.1186/1471-2105-9-266
Published: 6 June 2008Additional files
Additional file 1:
Model of central carbon metabolism of S. cerevisiae in SBML format. Additional file 1 contains the stoichiometric model of central carbon metabolism of S. cerevisiae used in the experiments of the article. The model is provided as a text file containing SBML compliant descriptions of metabolites and reactions in the model. Metabolites are identified by their KEGG LIGAND codes.
Format: TXT Size: 43KB Download file
Additional file 2:
Illustration of the model of central carbon metabolism of S. cerevisiae. Bidirectional reactions in PPP pathways are depicted as unidirectional for better readability.
Format: PDF Size: 22KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional file 3:
Model of central carbon metabolism of B. subtilis in SBML format. Additional file 2 contains the stoichiometric model of central carbon metabolism of B. subtilis used in the experiments of the article. The model is provided as a text file containing SBML compliant descriptions of metabolites and reactions in the model. Metabolites are identified by their KEGG LIGAND codes.
Format: TXT Size: 36KB Download file
Additional file 4:
Illustration of the model of central carbon metabolism of B. subtilis. Bidirectional reactions in PPP pathways are depicted as unidirectional for better readability.
Format: PDF Size: 19KB Download file
This file can be viewed with: Adobe Acrobat Reader