Table 1 |
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|
z-scores and classification performance |
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|
RNAz |
AlifoldZ |
SISSIz (mono) |
SISSIz (di) |
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|
|
|
|
|
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|
Data type |
N |
z |
S0.01 |
S0.05 |
z |
S0.01 |
S0.05 |
z |
S0.01 |
S0.05 |
z |
S0.01 |
S0.05 |
|
|
|||||||||||||
|
5S rRNA |
368 |
n/a |
0.77 |
0.98 |
-6.72 |
0.84 |
0.98 |
-6.35 |
0.86 |
0.98 |
-6.35 |
0.93 |
1.00 |
|
tRNA |
382 |
n/a |
0.74 |
0.98 |
-6.29 |
0.75 |
0.98 |
-6.24 |
0.74 |
0.98 |
-5.86 |
0.88 |
0.99 |
|
U2 snRNA |
458 |
n/a |
0.76 |
1.00 |
-7.17 |
0.89 |
0.99 |
-5.92 |
0.84 |
0.97 |
-5.22 |
0.93 |
0.99 |
|
U3 snRNA |
377 |
n/a |
0.52 |
0.92 |
-5.11 |
0.74 |
0.86 |
-4.47 |
0.69 |
0.83 |
-4.23 |
0.76 |
0.86 |
|
U5 snRNA |
424 |
n/a |
0.90 |
0.96 |
-5.61 |
0.77 |
0.96 |
-5.10 |
0.69 |
0.89 |
-4.43 |
0.76 |
0.91 |
|
Hammerhead |
499 |
n/a |
0.78 |
1.00 |
-6.68 |
0.85 |
1.00 |
-6.67 |
0.90 |
1.00 |
-6.66 |
0.99 |
1.00 |
|
Group II intron |
480 |
n/a |
0.68 |
0.82 |
-6.58 |
0.74 |
0.81 |
-6.77 |
0.72 |
0.81 |
-6.29 |
0.77 |
0.82 |
|
micro RNA precursor |
571 |
n/a |
0.75 |
1.00 |
-8.89 |
1.00 |
1.00 |
-8.84 |
1.00 |
1.00 |
-7.58 |
1.00 |
1.00 |
|
|
|||||||||||||
|
Total of all classes |
3559 |
n/a |
0.80 |
0.96 |
-6.75 |
0.87 |
0.95 |
-6.43 |
0.85 |
0.94 |
-5.93 |
0.90 |
0.95 |
|
Genomic background |
3559 |
n/a |
n/a |
n/a |
-0.44 |
n/a |
n/a |
-0.58 |
n/a |
n/a |
-0.15 |
n/a |
n/a |
|
|
|||||||||||||
|
S0.01, S0.05 ... Sensitivity at a false positive rate of 0.01 and 0.05, respectively. The highest values among the four different methods are shown in bold letters. |
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|
Gesell and Washietl BMC Bioinformatics 2008 9:248 doi:10.1186/1471-2105-9-248 |
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