|
Matrix generation criteria. |
|||||
| Matrix |
S |
Z |
W |
r |
B |
|
|
|||||
| CBM/12-0-0 |
12 |
0 |
0 |
- |
6 |
| CBM/12-1-0 |
12 |
1 |
0 |
- |
22 |
| CBM/12-1-1 |
12 |
1 |
1 |
- |
24 |
| CBM/12-2-0 |
12 |
2 |
0 |
- |
24 |
| CBM/12-2-1 |
12 |
2 |
1 |
- |
25 |
| CBM/11-0-0 |
11 |
0 |
0 |
- |
49 |
| CBM/11-1-0 |
11 |
1 |
0 |
- |
116 |
| CBM/11-1-1 |
11 |
1 |
1 |
- |
141 |
| CBM/11-2-0 |
11 |
2 |
0 |
- |
141 |
| CBM/11-2-1 |
11 |
2 |
1 |
- |
147 |
| CBM/10-0-0 |
10 |
0 |
0 |
- |
245 |
| CBM/10-1-0 |
10 |
1 |
0 |
- |
498 |
| CBM/10-1-1 |
10 |
1 |
1 |
- |
591 |
| CBM/10-2-0 |
10 |
2 |
0 |
- |
597 |
| CBM/10-2-1 |
10 |
2 |
1 |
- |
662 |
| CBM/09-0-0 |
9 |
0 |
0 |
- |
873 |
| CBM/09-1-0 |
9 |
1 |
0 |
- |
1505 |
| CBM/09-1-1 |
9 |
1 |
1 |
- |
1759 |
| CBM/09-2-0 |
9 |
2 |
0 |
- |
1784 |
| CBM/09-2-1 |
9 |
2 |
1 |
- |
1947 |
| CCFMAT70 |
- |
- |
- |
0.70 |
137 |
| CCFMAT53 |
- |
- |
- |
0.53 |
1196 |
| CCFMAT50 |
- |
- |
- |
0.50 |
1508 |
|
S = Required number of amino acids with expected deviation from BLOSUM62 values; Z = number of S amino acids allowed to be absent; W = value of one means tryptophan was allowed to be absent in addition to Z others; r = correlation coefficient lower limit; B = number of resultant blocks. | |||||
Brick and Pizzi BMC Bioinformatics 2008 9:236 doi:10.1186/1471-2105-9-236 |
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