Table 2

List of genome expression experiments on S. cerevisiae used in the sign inference process

Experiment Identifier

Description

Ref.


E1

Diauxic Shift

[40]

E2

Sporulation

[41]

E3

Expression analysis of Snf2 mutant

[42]

E4

Expression analysis of Swi1 mutant

[42]

E5

Pho metabolism

[43]

E6

Nitrogen Depletion

[44]

E7

Stationary Phase

[44]

E8

Heat Shock from 21°C to 37°C

[44]

E9

Heat Shock from 17°C to 37°C

[44]

E10

Wild type response to DNA-damaging agents

[45]

E11

Mec1 mutant response to DNA-damaging agents

[45]

E12

Glycosylation defects on gene expression

[46]

E13

Cells grown to early log-phase in YPE (Rich medium with 2% of Ethanol)

[47]

E14

Cells grown to early log-phase in YPG (Rich medium with 2% of Glycerol)

[47]

E15

Titratable promoter alleles – Ero1 mutant

[48]


All experiments contain information on steady state shift and their curated data is available in SGD (Saccharomyces Genome Database) [32].

Veber et al. BMC Bioinformatics 2008 9:228   doi:10.1186/1471-2105-9-228

Open Data