Methodology article
NestedMICA as an ab initio protein motif discovery tool
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* Corresponding author: Mutlu Doğruel md5@sanger.ac.uk
1 Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1HH, UK
2 Wellcome Trust/Cancer Research UK Gurdon Institute, University of Cambridge, Tennis Court Road, Cambridge CB2 1QN, UK
BMC Bioinformatics 2008, 9:19 doi:10.1186/1471-2105-9-19
Published: 14 January 2008Additional files
Additional file 1:
Motifs recovered by NestedMICA and MEME in the single-motif spiking tests, for motif set 2. This file contains a figure showing the second set of test motifs as recovered by the two compared programs, along with their cartesian distances to the original motifs and their MCC values.
Format: PDF Size: 2.2MB Download file
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Additional file 2:
Motifs recovered by NestedMICA and MEME in the single-motif spiking tests, for motif set 3. This file contains a figure showing the third set of test motifs as recovered by the two compared programs, along with their cartesian distances to the original motifs and their MCC values.
Format: PDF Size: 2.3MB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional file 3:
Sensitivity and specificity values for the motifs reported by NestedMICA and MEME. This file contains two tables showing sensitivity and specificity values of the compared programs in the single and multiple motif spiking tests.
Format: PDF Size: 294KB Download file
This file can be viewed with: Adobe Acrobat Reader