Table 1

Top 30 probes. Thirty probes of highest value v(s). 1st column: gene name in Hugo Gene nomenclature; 2nd column: reference of the Affymetrix DNA probe; 3rd column, v(s): probe valuation; 4th to 6th columns, p(s), n(s), c(s): numbers of pcr and nopcr correct predictions and total number c(s) = p(s) + n(s) of correct predictions for the 21 PCR and 61 NoPCR cases of the learning set.
Gene
 Probe
 v(s)
 p(s)
 n(s)
 c(s)
 p value (t test)
 rank among probe sets according to p value by t test
BTG3
 213134_x_at
 0.61
 12
 40
 52
 2,96E-05
 58
BTG3
 205548_s_at
 0.61
 12
 40
 52
 3,31E-05
 62
GATA3
 209604_s_at
 0.59
 15
 29
 44
 0,00020015
 148
GATA3
 209603_at
 0.49
 12
 26
 38
 0,00029983
 186
THRAP2
 212207_at
 0.46
 8
 34
 42
 2,56E-08
 3
SCCPDH
 201826_s_at
 0.46
 12
 22
 34
 0,00033299
 194
SIL
 205339_at
 0.45
 10
 27
 37
 0,00049604
 233
KRT7
 209016_s_at
 0.45
 6
 38
 44
 0,00248585
 539
MCM5
 201755_at
 0.45
 7
 35
 42
 0,00281786
 567
NME3
 204862_s_at
 0.44
 10
 25
 35
 2,45E-05
 52
METRN
 219051_x_at
 0.44
 11
 22
 33
 1,71E-06
 19
PDE4B
 211302_s_at
 0.43
 9
 27
 36
 0,00824095
 1062
PHF15
 212660_at
 0.42
 7
 32
 39
 2,83E-05
 57
SSR1
 200891_s_at
 0.42
 7
 32
 39
 0,00187004
 466
PISD
 202392_s_at
 0.42
 11
 20
 31
 6,61E-05
 92
MELK
 204825_at
 0.41
 8
 28
 36
 0,00012238
 120
CA12
 215867_x_at
 0.41
 10
 22
 32
 4,42E-05
 74
CA12
 214164_x_at
 0.41
 10
 22
 32
 4,70E-05
 77
MAPK3
 212046_x_at
 0.41
 10
 22
 32
 9,07E-06
 31
GATA3
 209602_s_at
 0.41
 13
 13
 26
 0,00068129
 269
BBS4
 212745_s_at
 0.41
 3
 42
 45
 1,25E-07
 4
DAPK1
 203139_at
 0.41
 9
 24
 33
 0,0006761
 266
SAS
 203226_s_at
 0.40
 7
 29
 36
 8,70E-05
 106
FLJ10916
 219044_at
 0.40
 8
 26
 34
 1,30E-06
 15
E2F3
 203693_s_at
 0.40
 8
 26
 34
 0,00044243
 219
AHNAK
 220016_at
 0.40
 9
 23
 32
 0,0001449
 129
KLHDC3
 214383_x_at
 0.40
 9
 23
 32
 0,00071442
 279
SFRS12
 212721_at
 0.40
 9
 23
 32
 5,34E-05
 87
SRPK1
 202200_s_at
 0.39
 6
 31
 37
 0,00067356
 265
CXCR4
 217028_at
 0.39
 8
 25
 33
 0,00098699
 339

Natowicz et al. BMC Bioinformatics 2008 9:149   doi:10.1186/1471-2105-9-149