Maximum Posterior Decoding estimations for the multiple sequence alignment of the subtilase family in the HOMSTRAD database. The two estimations were given based on samples from two Markov chains with different starting points. The similarity between the two independent estimations shows good convergence and mixing of the Markov chain.
Miklós et al. BMC Bioinformatics 2008 9:137 doi:10.1186/1471-2105-9-137