Table 3

Results for different filters applied to gene groups (k = 1,000).

K

500

1,000

2,000

3,000


Single Species cluster

422 (84.4%)

904 (90.4%)

1897 (94.9%)

2894 (96.5%)

# of Phenocopy-Pairs (of 25)

25 (100%)

13 (52%)

12 (48%)

8 (32%)

Cluster w/PT-Sim = 0.4

92 (18.4%)

293 (29.3%)

526 (26.3%)

810 (40.5%)

# Genes

3221

5886

6379

6878

Cluster w/GO-Sim = 0.4

51 (10.2%)

206 (20.6%)

522 (26.1%)

921 (46.1%)


Precision and recall values of function prediction in all clusters and with varying k selected by different combinations of the filters defined in Table 2.

Groth et al. BMC Bioinformatics 2008 9:136   doi:10.1186/1471-2105-9-136

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