Table 3

Results: Hierarchy Specific SVM Score Thresholding (ltc weights). The table presents results when a single SVM score threshold is selected for each hierarchy. These results are not significantly different from those for atc weights (compare with Table 2).



Training
 Testing
Hierarchy
 Split
 Threshold
 Recall
 Precision
 Fscore
 Recall
 Precision
 Fscore
MF
 1
 -0.83
 0.5971
 0.4165
 0.4640
 0.6382
 0.4162
 0.4735
MF
 2
 -0.81
 0.5732
 0.4194
 0.4614
 0.6525
 0.4537
 0.5091
MF
 3
 -0.81
 0.5687
 0.4133
 0.4551
 0.6522
 0.4311
 0.4908
MF
 4
 -0.83
 0.6099
 0.4079
 0.4634
 0.6928
 0.4416
 0.5138
MF
 5
 -0.83
 0.6107
 0.4148
 0.4672
 0.6880
 0.4036
 0.4822
MF
 Average
 na
 0.5919
 0.4144
 0.4622
 0.6647
 0.4292
 0.4939
CC
 1
 -0.83
 0.5426
 0.3135
 0.3772
 0.5383
 0.3248
 0.3810
CC
 2
 -0.81
 0.5075
 0.3248
 0.3765
 0.5422
 0.3437
 0.3971
CC
 3
 -0.83
 0.5194
 0.3136
 0.3685
 0.6488
 0.4075
 0.4763
CC
 4
 -0.85
 0.5606
 0.3080
 0.3779
 0.6216
 0.3161
 0.3929
CC
 5
 -0.84
 0.5689
 0.3284
 0.3956
 0.6137
 0.3136
 0.3993
CC
 Average
 na
 0.5398
 0.3177
 0.3791
 0.5929
 0.3411
 0.4093
BP
 1
 -0.82
 0.3773
 0.2596
 0.2881
 0.4204
 0.2894
 0.3163
BP
 2
 -0.84
 0.4124
 0.2595
 0.2965
 0.4912
 0.2898
 0.3423
BP
 3
 -0.86
 0.4405
 0.2522
 0.2983
 0.5366
 0.2737
 0.3395
BP
 4
 -0.85
 0.3935
 0.2344
 0.2713
 0.5211
 0.2856
 0.3497
BP
 5
 -0.85
 0.4472
 0.2691
 0.3131
 0.4680
 0.2466
 0.3035
BP
 Average
 na
 0.4142
 0.2550
 0.2935
 0.4875
 0.2770
 0.3303

Srinivasan and Qiu BMC Bioinformatics 2007 8(Suppl 9):S3   doi:10.1186/1471-2105-8-S9-S3