|
Percentage of problematic and singleton domain sequences. |
||
| Percentage of domains |
||
|
|
||
| Sequence dataset |
Transmembrane & problematic |
Singleton |
|
|
||
| SP-trEMBL |
18.5 |
22.6 |
| integr8_263 |
17.9 |
24.9 |
| A thaliana |
17.5 |
16.0 |
| B anthracis |
20.3 |
8.6 |
| C elegans |
19.8 |
22.1 |
| D melanogaster |
18.7 |
18.7 |
| E coli |
15.7 |
7.3 |
| H sapiens |
15.9 |
20.9 |
| S cerevisiae |
14.9 |
24.7 |
| T maritima |
13.4 |
12.7 |
|
The percentage of problematic and singleton domain sequences in Swiss-Prot & TrEMBL, 263 completed genomes and eight model genomes Problematic domains are defined as those containing helical transmembrane helices or significant regions of low complexity or coiled-coil | ||
Marsden et al. BMC Bioinformatics 2007 8:86 doi:10.1186/1471-2105-8-86 |
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