BMC Bioinformatics

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SpliceMiner: a high-throughput database implementation of the NCBI Evidence Viewer for microarray splice variant analysis

Ari B Kahn1,2, Michael C Ryan1,2,3, Hongfang Liu2,4, Barry R Zeeberg2, D Curtis Jamison1,5 and John N Weinstein2*

Author Affiliations

1 Department of Bioinformatics, George Mason University, Fairfax, Virginia, USA

2 Laboratory of Molecular Pharmacology, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, USA

3 Tiger Team Consulting, Fairfax, VA, USA

4 Georgetown University, Washington, DC, USA

5 School of Informatics, Northern Kentucky University, Highland Heights, KY, USA

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BMC Bioinformatics 2007, 8:75 doi:10.1186/1471-2105-8-75

Published: 5 March 2007

Additional files

Additional File 4:

Alternative splicing databases. This document provides a description of a large number of alternative splicing databases to provide context for the present study.

Format: DOC Size: 172KB Download file

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Open Data

Additional File 1:

EVDB build process. This document provides a more detailed description of the process performed to construct EVDB.

Format: DOC Size: 1.2MB Download file

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Open Data

Additional File 2:

SpliceMiner implementation. This document provides a system overview and software architecture description for SpliceMiner.

Format: DOC Size: 68KB Download file

This file can be viewed with: Microsoft Word Viewer

Open Data

Additional File 3:

EVDB synopsis. This document provides an overview of the contents of EVDB.

Format: DOC Size: 193KB Download file

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Open Data