Table 1 |
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|
Translation of OBO aspects into OWL. |
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|
OBO stanza |
OWL |
Required/Optional |
|
|
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|
name |
OWL-DL class name |
required |
|
id |
Extra-logical |
required |
|
alt_id |
Extra-logical |
optional |
|
namespace |
OWL namespace |
optional |
|
definition |
Extra-logical |
optional |
|
comment |
Extra-logical |
optional |
|
subset |
Extra-logical |
optional |
|
related_synonym |
"Some values from" restriction on related_synonym |
optional |
|
exact_synonym |
Equivalent class |
optional |
|
broad_synonym |
Superclass |
optional |
|
narrow_synonym |
Subclass |
optional |
|
xref_analog |
Extra-logical |
optional |
|
xref_unknown |
Extra-logical |
optional |
|
is_a |
Subclass |
optional |
|
relationship |
"Some values from" restriction on object property |
optional |
|
is_obsolete |
Extra-logical |
optional |
|
use_term |
Object property |
optional |
|
domain |
domain |
optional |
|
range |
range |
optional |
|
is_cyclic |
(see Section 6) |
optional |
|
is_transitive |
transitive |
optional |
|
is_symmetric |
symmetric |
optional |
|
|
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|
Aranguren et al. BMC Bioinformatics 2007 8:57 doi:10.1186/1471-2105-8-57 |
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