Table 1

Positive and negative errors for indirect phylogeny inference with varying mutation rate

SNPs

nH

Method

θ = 0.20

0.25

0.30

0.35

0.40

0.45

0.50

0.55

0.60


5

30

fastPHASE positive errors

2

8

8

13

7

15

14

8

14

5

30

fastPHASE negative errors

1

8

1

5

11

16

19

19

26

5

30

haplotyper positive errors

1

10

2

10

3

6

12

5

12

5

30

haplotyper negative errors

1

8

2

5

11

17

22

21

26


10

30

fastPHASE positive errors

7

12

27

38

28

38

38

27

42

10

30

fastPHASE negative errors

10

12

9

11

24

29

24

23

26

10

30

haplotyper positive errors

7

14

15

23

28

24

37

41

40

10

30

haplotyper negative errors

11

11

12

11

21

31

20

18

25


5

60

fastPHASE positive errors

6

7

7

15

16

13

16

11

14

5

60

fastPHASE negative errors

2

3

3

7

7

7

12

12

21

5

60

haplotyper positive errors

5

3

3

9

7

8

7

7

6

5

60

haplotyper negative errors

2

2

3

9

10

9

14

15

24


10

60

fastPHASE positive errors

24

25

25

29

28

32

43

54

41

10

60

fastPHASE negative errors

4

11

20

14

12

17

27

23

36

10

60

haplotyper positive errors

11

13

14

13

22

25

27

42

34

10

60

haplotyper negative errors

7

12

24

18

11

21

28

22

29


The table separates the phylogenetic errors from the experiments of Figure 2 into positive and negative errors for indirect phylogeny inference using fastPHASE and haplotyper.

Sridhar et al. BMC Bioinformatics 2007 8:472   doi:10.1186/1471-2105-8-472

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