Phylogenetic errors on lipoprotein lipase (LPL). Imperfections for 22 blocks from LPL. Each data point has an x-coordinate corresponding to the central SNP of a given block and a y-coordinate corresponding to the imperfection of the inferred phylogeny on that block. Data is shown for our direct method (solid grey line with squares), indirect inference with fastPHASE (dotted grey line with X's), indirect inference with haplotyper (dash-dot grey line with triangles), and the true imperfection (dashed black line with diamonds).
Sridhar et al. BMC Bioinformatics 2007 8:472 doi:10.1186/1471-2105-8-472